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Cryo-electron microscopy demonstrates polymorphism of small extracellular vesicles

https://doi.org/10.55959/MSU0137-0952-16-80-3S-6

Abstract

In this study the computer program Veronica was created – a specialized environment for marking images obtained by cryo-electron microscopy. It allows to highlight the contours of closed and unclosed objects and save them in a convenient format for analysis, as well as to determine the specified metrics for the study of morphology. The Veronica program was used to characterize the morphology of samples of small extracellular vesicles isolated from gastric juice of patients with gastric adenocarcinoma and conditionally healthy donors. An approach to image partitioning and calculation of indices to describe vesicles based on the measurement of nesting (a measure of the number of particles nested within each other) and branching (a measure of the number of adjacent particles surrounded by a common membrane) parameters has been proposed.

About the Authors

T. S. Trifonova
Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University
Russian Federation

1–12 Leninskie gory, Moscow, 119234



A. V. Moiseenko
Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University
Russian Federation

1–12 Leninskie gory, Moscow, 119234



G. O. Skryabin
Institute of Carcinogenesis, N.N. Blokhin National Medical Research Center of Oncology
Russian Federation

23 Kashirskoe Shosse, Moscow, 115478



O. T. Imaraliev
Institute of Carcinogenesis, N.N. Blokhin National Medical Research Center of Oncology
Russian Federation

23 Kashirskoe Shosse, Moscow, 115478



E. M. Chevkina
Institute of Carcinogenesis, N.N. Blokhin National Medical Research Center of Oncology
Russian Federation

23 Kashirskoe Shosse, Moscow, 115478



I. A. Karasev
Institute of Carcinogenesis, N.N. Blokhin National Medical Research Center of Oncology
Russian Federation

23 Kashirskoe Shosse, Moscow, 115478



A. Yu. Efimenko
Centre for Regenerative Medicine, Medical Research and Education Institute, Lomonosov Moscow State University
Russian Federation

119234, 27–10 Lomonosovsky Prospekt, Moscow



S. I. Trifonov
Pyrus Ltd
Russian Federation

24 Surikova Str., Moscow, 125080



D. V. Bagrov
Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University; Institute of Carcinogenesis, N.N. Blokhin National Medical Research Center of Oncology
Russian Federation

1–12 Leninskie gory, Moscow, 119234

23 Kashirskoe Shosse, Moscow, 115478



O. S. Sokolova
Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University; Faculty of Biology, MSU-BIT University
Russian Federation

1–12 Leninskie gory, Moscow, 119234

International University Park Road, Shenzhen, Guangdong Province, 518172



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Review

For citations:


Trifonova T.S., Moiseenko A.V., Skryabin G.O., Imaraliev O.T., Chevkina E.M., Karasev I.A., Efimenko A.Yu., Trifonov S.I., Bagrov D.V., Sokolova O.S. Cryo-electron microscopy demonstrates polymorphism of small extracellular vesicles. Vestnik Moskovskogo universiteta. Seriya 16. Biologiya. 2025;80(3):38–45. (In Russ.) https://doi.org/10.55959/MSU0137-0952-16-80-3S-6

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ISSN 0137-0952 (Print)