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THE GENOME SEQUENCING AND TRANSCRIPTOMIC ASSEMBLY OF THE PARASITOID WASP MEGAPHRAGMA AMALPHITANUM (HYMENOPTERA: TRICHOGRAMMATIDAE)

Abstract

Miniaturization of organisms is one of the most interesting evolutionary phenomena. This is a very common process, widely represented in multicellular organisms: invertebrates (nemertean, nematodes, brachiopods, mollusca, arachnids, and insects) and vertebrates (fishes, amphibians, birds, and even mammals). Miniaturization leads to a significant reduction in the body size and simplifying of some systems and organs without loss of species viability. The cell size reduce as well as genome and gene structure change during minitiaruzation. Typically, this complex evolutionary modification is associated with the occupation of ecological niches. Parasitoid wasp Megaphragma amalphitanum (Hymenoptera: Trichogrammatidae) is considered one of the smallest insects described to date and therefore is attractive as an object for studying of genetic aspects of body size reduction during evolution. The whole genome sequencing of M. amalphitanum and subsequent genome annotation and transcriptome assembly allow us to understand how the genetic material changes during miniaturization in relation to the corresponding characteristics of the larger Hymenoptera species. Preliminary analysis showed that the genome size of the M. amalphitanum is 346 Mbp; the transcriptome size is 27.5 Mbp.

About the Authors

E. B. Prokhortchouk
Lomonosov Moscow State University; Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences
Russian Federation

Department of Biotechnology, Faculty of Biology, Leninskiye gory 1-12, Moscow, 119234;

Leninsky prospect 33-2, Moscow, 119071



A. V. Nedoluzhko
National Research Centre “Kurchatov Institute”
Russian Federation
Kurchatov sq. 1, Moscow, 123182


F. S. Sharko
Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences
Russian Federation
Leninsky prospect 33-2, Moscow, 119071


S. V. Tsygankova
National Research Centre “Kurchatov Institute”
Russian Federation
Kurchatov sq. 1, Moscow, 123182


E. S. Boulygina
National Research Centre “Kurchatov Institute”
Russian Federation
Kurchatov sq. 1, Moscow, 123182


S. M. Rastorguev
National Research Centre “Kurchatov Institute”
Russian Federation
Kurchatov sq. 1, Moscow, 123182


A. S. Sokolov
Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences
Russian Federation
Leninsky prospect 33-2, Moscow, 119071


A. M. Mazur
Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences
Russian Federation
Leninsky prospect 33-2, Moscow, 119071


A. A. Polilov
Lomonosov Moscow State University
Russian Federation

Department of Entomology, Faculty of Biology, 

Leninskiye gory 1-12, Moscow, 119234



K. G. Skryabin
Lomonosov Moscow State University; National Research Centre “Kurchatov Institute”, ; Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences
Russian Federation

Department of Biotechnology, Faculty of Biology, Leninskiye gory 1-12, Moscow, 119234;

Kurchatov sq. 1, Moscow, 123182;

Leninsky prospect 33-2, Moscow, 119071



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Review

For citations:


Prokhortchouk E.B., Nedoluzhko A.V., Sharko F.S., Tsygankova S.V., Boulygina E.S., Rastorguev S.M., Sokolov A.S., Mazur A.M., Polilov A.A., Skryabin K.G. THE GENOME SEQUENCING AND TRANSCRIPTOMIC ASSEMBLY OF THE PARASITOID WASP MEGAPHRAGMA AMALPHITANUM (HYMENOPTERA: TRICHOGRAMMATIDAE). Vestnik Moskovskogo universiteta. Seriya 16. Biologiya. 2017;72(1):35-38. (In Russ.)

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ISSN 0137-0952 (Print)